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Genomic Medicine

NIH Genomic Data Sharing Policy

The NIH GDS Policy became effective for competing grant applications submitted for the January 25, 2015, receipt date; contract proposals submitted to NIH on or after January 25, 2015; and for intramural projects generating genomic data on or after August 31, 2015. The NIH GDS Policy applies to all NIH-funded research (e.g., grants, contracts, and intramural research) that generates large-scale human or non-human genomic data, regardless of the funding level, as well as the use of these data for subsequent research. Large-scale data include genome-wide association studies (GWAS), single nucleotide polymorphisms (SNP) arrays, and genome sequence, transcriptomic, epigenomic, and gene expression data. 

Team Science

Open Data Repositories Listing

Sequencing:

Database of Genomic Variants Archive (DGVa) http://www.ebi.ac.uk/dgva

dbSNP http://www.ncbi.nlm.nih.gov/snp

dbVar http://www.ncbi.nlm.nih.gov/dbvar

DNA DataBank of Japan (DDBJ) http://www.ddbj.nig.ac.jp

EBI Metagenomics http://www.ebi.ac.uk/metagenomics

EMBL Nucleotide Sequence Database http://www.ebi.ac.uk/ena

European Variation Archive (EVA) http://www.ebi.ac.uk/eva/?Home

GenBank http://www.ncbi.nlm.nih.gov/genbank

miRBase http://www.mirbase.org

NCBI Sequence Read Archive (SRA) http://www.ncbi.nlm.nih.gov/sra

NCBI Trace Archive http://www.ncbi.nlm.nih.gov/Traces/home

Uniprot http://www.ebi.ac.uk/uniprot

 

Omics:

ArrayExpress http://www.ebi.ac.uk/arrayexpress

Biological General Repository for Interaction Datasets (BioGRID) http://thebiogrid.org

Database of Interacting Proteins (DIP) http://dip.doe-mbi.ucla.edu/dip/Main.cgi

dbGap http://www.ncbi.nlm.nih.gov/gap

The European Genome-phenome Archive http://www.ebi.ac.uk/ega

Gene Expression Omnibus (GEO) http://www.ncbi.nlm.nih.gov/geo

Genome RNAi http://www.genomernai.org

GPM DB http://gpmdb.thegpm.org/index.html

IntAct Molecular Interaction Database http://www.ebi.ac.uk/intact

MetaboLights http://www.ebi.ac.uk/metabolights

NURSA https://www.nursa.org/nursa/index.jsf

PeptideAtlas http://www.peptideatlas.org

ProteomeXchange http://www.proteomexchange.org

Proteomics Identifications (PRIDE) http://www.ebi.ac.uk/pride/archive

Genomic Data

Journals